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SIB BLAST Network Service

This NCBI BLAST2 service is maintained by the Swiss Institute of Bioinformatics.

Click on the ? icons to access the online BLAST help.

? Accession number or sequence

Enter a Swiss-Prot/TrEMBL accession number or a PROTEIN sequence in RAW format.

Output format:

or

Content-type: text/html

Software error:

Cannot open /work/expasy/databases_raw/from_incmatch/hamap/proteomes_list.dat: Permission denied at /work/expasy/www/cgi-bin/BLAST.pl line 517.

For help, please send mail to the webmaster (webmaster@expasy.org), giving this error message and the time and date of the error.

Content-type: text/html

Software error:

[Sat May 17 23:20:40 2008] BLAST.pl: Cannot open /work/expasy/databases_raw/from_incmatch/hamap/proteomes_list.dat: Permission denied at /work/expasy/www/cgi-bin/BLAST.pl line 517.
	Expasy::die('[Sat May 17 23:20:40 2008] BLAST.pl: Cannot open /work/expasy...') called at /work/expasy/lib/5.8.3/CGI/Carp.pm line 314
	CGI::Carp::realdie('[Sat May 17 23:20:40 2008] BLAST.pl: Cannot open /work/expasy...') called at /work/expasy/lib/5.8.3/CGI/Carp.pm line 403
	CGI::Carp::die('Cannot open /work/expasy/databases_raw/from_incmatch/hamap/pr...') called at /work/expasy/www/cgi-bin/BLAST.pl line 517

For help, please send mail to the webmaster (webmaster@expasy.org), giving this error message and the time and date of the error.

Choose the appropriate BLAST ? program and ? database:

blastp - query against the UniProt Knowledgebase (Swiss-Prot + TrEMBL)

? Taxonomic groups (not available for PDB and translated EST):

select a database subsection To restrict the search to a particular taxon, it is much faster to select a database subsection from the drop-down list on the left than to specify your own taxonomic group in the box below. This also gives more accurate statistics.
or specify a taxonomic group Enter a species name, a TaxID or the latin name of a taxonomic group (elements of the OC, OS and OX lines) to restrict your search to a particular taxon. You may enter a list separated by semicolons (";"). Example: Fungi; Homo sapiens.
or select a microbial proteome
Non-redundant Swiss-Prot+TrEMBL complete proteome sets, see the HAMAP pages.
Search only Swiss-Prot (curated sequences)     Exclude fragment sequences
 
blastp - query against another protein database Please, supply an email address if you select the translated ESTs.
 
tblastn - query against the six-frame translation of a nucleotide database