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UniProtKB/Swiss-Prot entry Q8UID1


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DEF_AGRT5
Primary accession number Q8UID1
Secondary accession numbers None
Integrated into Swiss-Prot on September 19, 2002
Sequence was last modified on June 1, 2002 (Sequence version 1)
Annotations were last modified on    November 25, 2008 (Entry version 38)
Name and origin of the protein
Protein name Peptide deformylase
Synonyms PDF
EC 3.5.1.88
Polypeptide deformylase
Gene name
Name: def
OrderedLocusNames: Atu0366
ORFNames: AGR_C_640
From
Agrobacterium tumefaciens (strain C58 / ATCC 33970) [TaxID: 176299] [HAMAP proteome]
Taxonomy Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.
Protein existence 3: Inferred from homology;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1126/science.1066804; PubMed=11743193 [NCBI, ExPASy, EBI, Israel, Japan]
Wood D.W., Setubal J.C., Kaul R., Monks D.E., Kitajima J.P., Okura V.K., Zhou Y., Chen L., Wood G.E., Almeida N.F. Jr., Woo L., Chen Y., Paulsen I.T., Eisen J.A., Karp P.D., Bovee D. Sr., Chapman P., Clendenning J., Deatherage G., Gillet W., Grant C., Kutyavin T., Levy R., Li M.-J., McClelland E., Palmieri A., Raymond C., Rouse G., Saenphimmachak C., Wu Z., Romero P., Gordon D., Zhang S., Yoo H., Tao Y., Biddle P., Jung M., Krespan W., Perry M., Gordon-Kamm B., Liao L., Kim S., Hendrick C., Zhao Z.-Y., Dolan M., Chumley F., Tingey S.V., Tomb J.-F., Gordon M.P., Olson M.V., Nester E.W.;
"The genome of the natural genetic engineer Agrobacterium tumefaciens C58.";
Science 294:2317-2323(2001).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1126/science.1066803; PubMed=11743194 [NCBI, ExPASy, EBI, Israel, Japan]
Goodner B., Hinkle G., Gattung S., Miller N., Blanchard M., Qurollo B., Goldman B.S., Cao Y., Askenazi M., Halling C., Mullin L., Houmiel K., Gordon J., Vaudin M., Iartchouk O., Epp A., Liu F., Wollam C., Allinger M., Doughty D., Scott C., Lappas C., Markelz B., Flanagan C., Crowell C., Gurson J., Lomo C., Sear C., Strub G., Cielo C., Slater S.;
"Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58.";
Science 294:2323-2328(2001).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AE007869; AAK86183.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR AF2621; AF2621.
F97403; F97403.
RefSeq NP_353398.1; -.
3D structure databases
HSSP Q9I7A8; 1LRY. [HSSP ENTRY / PDB]
ModBase Q8UID1.
Ontologies
GO
GO:0005506; Molecular function: iron ion binding (inferred from electronic annotation from InterPro).
GO:0042586; Molecular function: peptide deformylase activity (inferred from electronic annotation from HAMAP).
GO:0006412; Biological process: translation (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_00163; -; 1.
PBIL [Tree]
InterPro IPR000181; Fmet_deformylase.
Graphical view of domain structure.
Gene3D G3DSA:3.90.45.10; Fmet_deformylase; 1.
PANTHER PTHR10458; Fmet_deformylase; 1.
Pfam PF01327; Pep_deformylase; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF004749; Pep_def; 1.
PRINTS PR01576; PDEFORMYLASE.
ProDom PD003844; Fmet_deformylase; 1.
[Domain structure / List of seq. sharing at least 1 domain]
TIGRFAMs TIGR00079; pept_deformyl; 1.
ProtoNet Q8UID1.
Genome annotation databases
GeneID 1132404; -.
GenomeReviews AE007869_GR; Atu0366.
KEGG atc:AGR_C_640; -.
atu:Atu0366; -.
Phylogenomic databases
HOGENOM Q8UID1; -.
Genome annotation databases
CMR Q8UID1; Atu0366.
Other
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome; Hydrolase; Iron; Metal-binding; Protein biosynthesis.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   170  170     Peptide deformylase. PRO_0000082729
ACT_SITE   137   137        By similarity. 
METAL   94    94        Iron (By similarity). 
METAL   136   136        Iron (By similarity). 
METAL   140   140        Iron (By similarity). 
Sequence information
Length: 170 AA [This is the length of the unprocessed precursor] Molecular weight: 19026 Da [This is the MW of the unprocessed precursor] CRC64: CAA0DE1D6497AD22 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MTIKPLIILP DPVLRQQSKL IEQVDAEVLR LADDMLETMY DAPGIGLAAI QIGVPRRMLV 

        70         80         90        100        110        120 
IDVAREGEEK TPVVFINPEI LKVSDDISTY EEGCLSIPDY YAEVERPASL TVQYVGRDGK 

       130        140        150        160        170 
QQTVEADGLL ATCLQHEIDH LNGVLFIDHI SRLKRDMVIK KFTKAARAKI 

Q8UID1 in FASTA format

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BLAST logo BLAST submission on ExPASy/SIB
or at NCBI (USA)
Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
PROSITE logo ScanProsite, MotifScan SWISS-MODEL Submit a homology modeling request to SWISS-MODEL
NPSA logo NPSA Sequence analysis tools

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