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- Glycomics
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- Database
UniCarb-DB
Glycan structures and associated mass spectrometry data
GlycoDigest
- Glycomics
- Software tool
GlycoDigest is a tool that simulates the action of these exoglycosidases on released oligosaccharides. It assists glycobiologists in designing enzyme mixtures that can be used to guide the precise determination of glycan structures.
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Swiss Mass Abacus
Intuitive calculator of peptide and glycopeptide masses-
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SugarSketcher
Fast, intuitive, SNFG-compliant glycan structure drawing-
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- Glycomics
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SugarBind
Pathogen Sugar-Binding Database-
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- Glycomics
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GlyS3
Match a glycan substructure to a database of full structures-
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- Glycomics
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Glynsight
Visualise and compare glycan expression profiles-
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Glydin'
Network representation of known glycan determinants-
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- Glycomics
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GlycoSiteAlign
Multiple alignment of sequences around glycosylation sites-
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- Proteins & Proteomes
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GlyConnect
Integrated data platform to study glycosylation-
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- Glycomics
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- Software tool
EpitopeXtractor
Compare glycan structures to Glydin' network's collection-
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- Proteins & Proteomes
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GlycoMod
Possible oligosaccharide structures on proteins from masses-
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- Glycomics
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GlyConnect Compozitor
Contextualises glycan composition sets-
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- Glycomics
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- Database
Glyco@Expasy
Zooming in on web-based glycoinformatics resources-
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- Systems Biology
- , Glycomics
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- Software tool
HMO-Glycologue
Simulator of Human Milk Oligosaccharide synthesis-
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- Proteins & Proteomes
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- Glycomics
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GlyConnect SPARQL endpoint
SPARQL access to GlyConnect-
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- Glycomics
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GAG-DB
3D structures of glycosaminoglycans-
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- Proteins & Proteomes
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- Glycomics
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MzJava
Open source Java class library to process MS fragmentation-
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UniLectin
Structural and functional classification of lectins-
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- Metabolomics
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MSight
Mass Spectrometry Imager-
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- Proteins & Proteomes
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- Software tool
Sulfinator
Predict tyrosine sulfation sites in protein sequences-
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- Proteins & Proteomes
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- Software tool
PeptideMass
Theoretical protein cleavage by a given enzyme-
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- Proteins & Proteomes
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Myristoylator
N-terminal myristoylation of proteins by neural networks-
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- Proteins & Proteomes
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FindPept
Unspecific protein cleavage from experimental masses-
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- Proteins & Proteomes
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FindMod
Potential PTMs and single amino acid substitutions-
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MetaNetX
Metabolic network repository & analysis-
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SwissLipids
Knowledge resource for lipids-
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Rhea
Expert-curated database of biochemical reactions-
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- Proteins & Proteomes
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- Software tool
PeptideCutter
Potential cleavage sites in a protein-
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- Proteins & Proteomes
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- Database
ENZYME
Enzyme nomenclature database-
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- Proteins & Proteomes
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- Systems Biology
- , Metabolomics
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- Database
Rhea SPARQL endpoint
SPARQL access to the Rhea knowledgebase-
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- Lipidomics
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SwissLipids SPARQL endpoint
SPARQL access to the SwissLipids knowledgebase-
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MetaNetX SPARQL endpoint
SPARQL access to MetaNetX-
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EnzChemRED
Enzyme Chemistry Relation Extraction Dataset-